Is There A Way To Recalibrate Genotype Calls Made Via Samtools/Bcftools?
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11.3 years ago
Dan ▴ 530

Hi,

I've read that genotype calls produced by bcftools are 'inaccurate' as mentioned in Why does samtools/bcftools give incorrect genotypes and innacurate quality scores?.

Is there a tool to go through and 'recalibrate' using the PL information?

Cheers, Dan.

vcf samtools bcftools genotyping • 2.0k views
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This could be done with a simple Perl script I guess...

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