I'm an undergrad taking up a beginner's project on metagenomic tools for annotation and visualization of the metabolic pathways. I'm confused by the workings of GLIMMER3. I tried experimenting with the sample files that came with the download to see if I fully understand how to operate GLIMMER3 by reproducing the given results.
The thing is I'm unsure if the scripts given (namely
g3-iterated) are to be used in a consecutive manner.
I'd assumed these scripts had to be used in order starting with
g3-from-scratch, and I've generated a number of files. Thereafter I'm stuck at
g3-from-training. I downloaded and read through the only tutorial I could find and it says to type the command in the form:
g3-from-training.csh [yourgenom.seq] train.coords run2
I can't find a
.coords file generated from the previous
g3-from-scratch run and so I can't proceed. Please advise me on what I should do. I wanna progress from here! =[