Can you suggest any visualization tools for gene-wide results?
I have some gene-wide results which i would like to plot (rather than putting the results in a big table). The raw data was at SNP-level.
My results file contains the following fields: Chromosome, Gene, P-value (for that gene), Gene start position, Gene end position
Also, are there any free tools out there which can take gene-wide p-values and perform pathway analysis based on that?