Question: Human Or Mouse Datasets With Rnaseq+Pol2+H3K4Me3?
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6.2 years ago by
United Kingdom
141341254653464453.4k wrote:

What would be a good datasets for the human or mouse genome that combine Illumina RNAseq plus Polymerase 2 (Pol2) ChIP-seq plus H3K4me3 ChIP-seq for the same samples?

If the answer is ENCODE or mENCODE, what dataset in those projects would have the best quality/coverage?

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ADD COMMENTlink modified 5.5 years ago by Chirag Nepal2.2k • written 6.2 years ago by 141341254653464453.4k
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5.5 years ago by
Chirag Nepal2.2k
Copenhagen
Chirag Nepal2.2k wrote:

YEs, the answer is Encode. It all depends upon your interest, i.e, which cell lines are you interested in. OR you could use all and do comparisons between different cell lines. While for Pol II, use Chip-expo data instead of Chip-seq. Data is available from recent paper from Frank Pugh's lab.

ADD COMMENTlink written 5.5 years ago by Chirag Nepal2.2k
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