I would like individual level genotypes for a SNP that appears in the 1000 genomes browser and dbSNP. When I pull the VCF for the region using the Data Slicer, I get calls for SNPs around my Mystery SNP but not for my actual mystery SNP. Pulling down the VCF and searching with tabix gives the same result. It's not clear to me why this SNP doesn't have individual calls. Is the most reasonable way to go forward to pull down the region around the SNP from the source BAM files and call genotypes with mpileup? If so, is there a better way to do this than manually scripting it out? Thanks.