I was wondering if there is any way to associate each supporting read of the fasta file (that you get with the -d option) with its structural variation. Let's say I have this deletion:
scaffold_1 44905 73+0- scaffold_1 45119 72+76- DEL 224 99 73 sample.bam|73 0.828015 0.34
This has 73 supporting reads, and I have a fasta file from the breakdancer output "reads.bar.1.fastq" and "reads.bar.2.fastq". Is there any way to associate them?
Thanks a lot!