Question: Orthomcl Output File Processing
0
gravatar for User 6777
7.1 years ago by
User 677720
United States
User 677720 wrote:

Hi all,

Anyone has any idea about the processing of output file that has been generated by orthomcl (groups.txt)?? I generate a bit matrix from this file and it looks like:

Group1 Group2 Group3 Group4 .............
First 1 0 1 1 .............
Second 0 0 1 1 .............
Third 1 0 1 0 .............
Forth 1 1 0 1 .............
.............
........

Now I want to randomly recombine each column (with values), for each possible combinations (eg. random combinations of 2 columns, random combinations of 3 columns etc)..

Any kind of help for solving this problem is highly appreciated.. thank you for your consideration...

orthomcl clustering • 2.7k views
ADD COMMENTlink written 7.1 years ago by User 677720

Try CD-HIT Server instead of OrthoMCL.

ADD REPLYlink written 7.1 years ago by Nari880
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2134 users visited in the last hour