Question: Orthomcl Output File Processing
0
gravatar for User 6777
6.6 years ago by
User 677710
United States
User 677710 wrote:

Hi all,

Anyone has any idea about the processing of output file that has been generated by orthomcl (groups.txt)?? I generate a bit matrix from this file and it looks like:

Group1 Group2 Group3 Group4 .............
First 1 0 1 1 .............
Second 0 0 1 1 .............
Third 1 0 1 0 .............
Forth 1 1 0 1 .............
.............
........

Now I want to randomly recombine each column (with values), for each possible combinations (eg. random combinations of 2 columns, random combinations of 3 columns etc)..

Any kind of help for solving this problem is highly appreciated.. thank you for your consideration...

orthomcl clustering • 2.0k views
ADD COMMENTlink written 6.6 years ago by User 677710

Try CD-HIT Server instead of OrthoMCL.

ADD REPLYlink written 6.6 years ago by Nari870
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