Rna Regulation Of Gene Transcription Database

Question: Rna Regulation Of Gene Transcription Database

5.7 years ago by

University of Oslo, Oslo, Norway

Hello All,

I would like to know whether somebody knows about a database gathering information about gene transcriptional regulation through RNAs. For instance, some long non-coding RNAs regulate the transcription of genes (activation or silencing), the same can occur using small non-coding RNAs like microRNAs. I am not aware of such a parsable resource and would be very thankful to get some pointers.

Best.

database transcription • 2.7k views

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modified 5.0 years ago by lsp03yjh • 610 • written 5.7 years ago by Anthony Mathelier • 860

5.7 years ago by

Neilfws ♦ 48k

Sydney, Australia

Neilfws ♦ 48k wrote:

Don't know about "parsable" but I know of at least two useful resources for lnc/linc RNAs:

EDIT: Here's another which includes targets; there's an IP address in the URL so cannot vouch for its stability - LncRNADisease.

ADD COMMENT • link modified 5.7 years ago • written 5.7 years ago by Neilfws ♦ 48k

Thank you for the links. Unfortunately, they provide data about lncRNA locations but not there potential targets for transcription silencing or activation.

Maybe this resource does not exist so far.

ADD REPLY • link written 5.7 years ago by Anthony Mathelier • 860

See my edit for a third resource with target information.

ADD REPLY • link written 5.7 years ago by Neilfws ♦ 48k

Thank you very much for the link.

ADD REPLY • link written 5.7 years ago by Anthony Mathelier • 860

5.7 years ago by

Zhidkov • 560

Israel

Zhidkov • 560 wrote:

You can check data in ChIPBase
or starBase

ADD COMMENT • link written 5.7 years ago by Zhidkov • 560

I did not know about starBase, it looks interesting. Thank you very much.

ADD REPLY • link written 5.7 years ago by Anthony Mathelier • 860

5.0 years ago by

lsp03yjh • 610

China

lsp03yjh • 610 wrote:

you can try starBase. starBase provides various RNA-RNA and protien-RNA regulatory interactions, including miRNA-lncRNA, miRNA-mRNA, miRNA-circRNA, miRNA-pseudogene, miRNA-sncRNA, protein-RNA interactions and ceRNA networks.

ADD COMMENT • link written 5.0 years ago by lsp03yjh • 610

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