Question: Rna Regulation Of Gene Transcription Database
3
gravatar for Anthony Mathelier
4.8 years ago by
University of Oslo, Oslo, Norway
Anthony Mathelier840 wrote:

Hello All,

I would like to know whether somebody knows about a database gathering information about gene transcriptional regulation through RNAs. For instance, some long non-coding RNAs regulate the transcription of genes (activation or silencing), the same can occur using small non-coding RNAs like microRNAs. I am not aware of such a parsable resource and would be very thankful to get some pointers.

Best.

database transcription • 2.3k views
ADD COMMENTlink modified 4.0 years ago by lsp03yjh470 • written 4.8 years ago by Anthony Mathelier840
6
gravatar for Neilfws
4.8 years ago by
Neilfws47k
Sydney, Australia
Neilfws47k wrote:

Don't know about "parsable" but I know of at least two useful resources for lnc/linc RNAs:

EDIT: Here's another which includes targets; there's an IP address in the URL so cannot vouch for its stability - LncRNADisease.

ADD COMMENTlink modified 4.8 years ago • written 4.8 years ago by Neilfws47k

Thank you for the links. Unfortunately, they provide data about lncRNA locations but not there potential targets for transcription silencing or activation.

Maybe this resource does not exist so far.

ADD REPLYlink written 4.8 years ago by Anthony Mathelier840

See my edit for a third resource with target information.

ADD REPLYlink written 4.8 years ago by Neilfws47k

Thank you very much for the link.

ADD REPLYlink written 4.8 years ago by Anthony Mathelier840
3
gravatar for Zhidkov
4.8 years ago by
Zhidkov550
Israel
Zhidkov550 wrote:

You can check data in ChIPBase
or starBase

ADD COMMENTlink written 4.8 years ago by Zhidkov550

I did not know about starBase, it looks interesting. Thank you very much.

ADD REPLYlink written 4.8 years ago by Anthony Mathelier840
0
gravatar for lsp03yjh
4.0 years ago by
lsp03yjh470
China
lsp03yjh470 wrote:

you can try starBase. starBase provides various RNA-RNA and protien-RNA regulatory interactions, including miRNA-lncRNA, miRNA-mRNA, miRNA-circRNA, miRNA-pseudogene, miRNA-sncRNA, protein-RNA interactions and ceRNA networks.

ADD COMMENTlink written 4.0 years ago by lsp03yjh470
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