Rna Regulation Of Gene Transcription Database
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8.9 years ago

Hello All,

I would like to know whether somebody knows about a database gathering information about gene transcriptional regulation through RNAs. For instance, some long non-coding RNAs regulate the transcription of genes (activation or silencing), the same can occur using small non-coding RNAs like microRNAs. I am not aware of such a parsable resource and would be very thankful to get some pointers.

Best.

transcription database • 3.6k views
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8.9 years ago
Neilfws 49k

Don't know about "parsable" but I know of at least two useful resources for lnc/linc RNAs:

EDIT: Here's another which includes targets; there's an IP address in the URL so cannot vouch for its stability - LncRNADisease.

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Thank you for the links. Unfortunately, they provide data about lncRNA locations but not there potential targets for transcription silencing or activation.

Maybe this resource does not exist so far.

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See my edit for a third resource with target information.

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Thank you very much for the link.

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8.9 years ago
Zhidkov ▴ 580

You can check data in ChIPBase
or starBase

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I did not know about starBase, it looks interesting. Thank you very much.

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8.2 years ago
lsp03yjh ▴ 810

you can try starBase. starBase provides various RNA-RNA and protien-RNA regulatory interactions, including miRNA-lncRNA, miRNA-mRNA, miRNA-circRNA, miRNA-pseudogene, miRNA-sncRNA, protein-RNA interactions and ceRNA networks.

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