Question: How To Draw Phylogeny Tree Using Mauve Output?
gravatar for Nari
7.4 years ago by
United States
Nari880 wrote:

I have alignment file for few small genomes obtained from MAUVE.
MAUVE itself has no provision for plotting Phylogeny Tree.
Can anyone suggest, tool which can directly take MAUVE alignment output for drawing Phylogeny Tree.
(Either online tools or tools for Windows7 will be appreciated)

phylogeny • 3.7k views
ADD COMMENTlink modified 7.4 years ago by skymningen330 • written 7.4 years ago by Nari880
gravatar for skymningen
7.4 years ago by
skymningen330 wrote:

MAUVE does provide the guide tree for the alignment in Newick format. If that is what you meant with MAUVE output, this text file can be used with several tools for drawing trees like PHYLIP or PHYFI (which are available online).

ADD COMMENTlink written 7.4 years ago by skymningen330

That's guide tree for multiple alignment not a phylogenetic tree output in alignment file.

ADD REPLYlink modified 7.2 years ago • written 7.4 years ago by Nari880

Yes, but I don't recall any tool converting the xmfa files to newick or any other tree format, sorry. I had the same idea before, so I have spent time searching for it. I ended up using the guide trees for a basic idea of relationships.

ADD REPLYlink written 7.4 years ago by skymningen330
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