Tools Of Estimating Linkage Disequilibrium/Recombination Rate And Rr Hotspot Based On Ngs Population Data
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10.9 years ago
Jianfengmao ▴ 310

I would like to hear your advice on/recommendation of a tools of estimating Linkage Disequilibrium/Recombination Rate and RR hot-spot based on NGS population data.

For me, I have gotten known with LDhat. But, I have implemented in my study. I wonder if there are robust but more easy-for-use tools like LDhat. Also, I would like to hear your experience of using those ones or good guides for them.

Thanks in advance.

linkage recombination • 2.7k views
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10.7 years ago

Shameless plug, if you have haplotyped data in the hapmap genotype format, you could try http://www.ub.edu/softevol/variscan

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