How Do I Annotate Multiple *.Gvf Files At Once Using Vaast - Vat?

Question

[gitags]

How to annotate multiple .gvf files at once using VAAST - VAT. (*.gvf -> *.vat.gvf)

Answer 1

[Zev.Kronenberg]

Our lab has setup a specific user group for VAAST related questions:

[e-mail]

To answer your question:

find *gvf | xargs -I {} -P [your pref] vaast_tools/vaast_indexer {}
find *gvf > annotate.vats.sh


split -l [your pref] annotate.vats.sh

nohup sh xaa &
nohup sh xab &
nohup sh xac &
nohup sh xad &

[gitags]

Thanks but I have another question. Can we convert vcf file directly to cdr?

[Zev.Kronenberg]

That is high on the priority list.