Gff Annotation File For Affymetrix Human Promoter Array 1.0R
1
0
Entering edit mode
9.5 years ago
Sebastian ▴ 10

Hey everybody!

I am analyzing some ChIP-chip data (from Affymetrix Human Promoter Array 1.0R) using Bioconductor and the Starr package. I have determinded some peaks in my results and want to annotate them now. So I need an annotation file in GFF format.

Where can I download this from? There is now information about GFF files for the Human Promoter chip on the Affymetrix website, only for Human Exon and Gene chips... Alternatively, is there an option to create this file, maybe using the UCSC table browser?

Thanks a lot in advance!

affymetrix human promoter gff annotation • 2.5k views
ADD COMMENT
0
Entering edit mode
9.5 years ago
Sebastian ▴ 10

So independently of having the Affymetrix Human Promoter Array 1.0R, where can I generally download GFF files from?

ADD COMMENT

Login before adding your answer.

Traffic: 1275 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6