Question: Does Galaxy Offer Assembly Software?
gravatar for 14134125465346445
7.9 years ago by
United Kingdom
141341254653464453.5k wrote:

I have been browsing the Galaxy wiki pages and they mention galaxy wrappers for several assembly tools, like Velvet, Trinity and Abyss, but I couldn't find the documentation on how to have them working on the cloud.

There is a Galaxy cloud screencast, but I couldn't find detailed instructions on where to find the assembly wrappers code (this url gives me a 404: and how to set them up for a Galaxy Cloud instance. Anyone?

software assembly galaxy cloud • 3.6k views
ADD COMMENTlink modified 7.9 years ago by tnabtaf100 • written 7.9 years ago by 141341254653464453.5k
gravatar for Istvan Albert
7.9 years ago by
Istvan Albert ♦♦ 86k
University Park, USA
Istvan Albert ♦♦ 86k wrote:

As far as I know assembly is not offered in the default Galaxy server due to the unpredictable amount of computing resources that an assembly may require. So you would need to run a custom Galaxy instance while deploying your own tools.

ADD COMMENTlink written 7.9 years ago by Istvan Albert ♦♦ 86k
gravatar for tnabtaf
7.9 years ago by
tnabtaf100 wrote:

There are several publicly accessible servers that support assembly. See My memory is that CBIIT and Andromeda do.

The Galaxy cloud instance supports Velvet when it first comes up. See for almost up-to-date instructions on how to set up a coud instance at AWS.

If you have your own Galaxy instance there are several tools in the tool shed you can use. See and click on Assembly.

ADD COMMENTlink modified 7.9 years ago by Istvan Albert ♦♦ 86k • written 7.9 years ago by tnabtaf100
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