How To Detect Coevolving Residues In Two Protein

Question

[Whetting]

Hi Biostars,

I was wondering whether anyone knew any programs/tools to detect residues in two different proteins that are co*evolving. I currently created a concatenated alignment of both proteins. Basically, this way the algorithms get fooled into thinking I am looking at a single protein. However, I was hoping there may be better ways to do this. Any suggestions would be appreciated!

Answer 1

[Pappu]

Have a look at evfold.org , plmDCA and PSICOV by David Jones.

[PoGibas]

Maybe you know any tool for ncRNA coevolution (or just for any genomic regions)?