I'm using BEAST to run a data of 172 taxa of 90 000 sites. first time i run 10 000 000 MCMCs, takes me 22 days!! but the log file shows by tracer, it it not get to the stable state.
if it runs 100 000 000 MCMCs, i think it will get batter?
but can BEAST use muliple cores to run ? there is an option: -threads, but it still use only 1 core. i know the it can run parallel， like 10 runs of 10 000 000, but i think the result is still not what i want.
please someone help me.