Question: How To Set Minimum Read Depth Of 20 While Using Vcfutils.Pl Varfilter Command To Filter Variants.
0
gravatar for shilpy
6.2 years ago by
shilpy10
shilpy10 wrote:

How to set minimum read depth of 20 while using vcfutils.pl varFilter command to filter variants.

samtools • 1.9k views
ADD COMMENTlink modified 6.2 years ago by Gabriel R.2.6k • written 6.2 years ago by shilpy10

what did you try ?

ADD REPLYlink written 6.2 years ago by Pierre Lindenbaum121k
2
gravatar for Gabriel R.
6.2 years ago by
Gabriel R.2.6k
Center for Geogenetik Københavns Universitet
Gabriel R.2.6k wrote:

vcfutils.pl varFilter -d 20

ADD COMMENTlink written 6.2 years ago by Gabriel R.2.6k

Thanks ! I got it now.

ADD REPLYlink written 6.2 years ago by shilpy10
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