Question: Plink --Update-Alleles Command Is Not Resulting In Right Way
gravatar for kumar.vinod81
6.5 years ago by
New Delhi
kumar.vinod81280 wrote:

I am running update allele command in plink but results is not coming in right way: Command is like this: ./plink --file mydata --update-alleles mylist.txt --make-bed --out newfile

but whenever there is a heterozygote in the file its change it into 0 0 not into the given code in the mylist.txt. Is is their any command I am to put with this to identify heterozygote.

plink command-line • 2.0k views
ADD COMMENTlink modified 5.4 years ago by Biostar ♦♦ 20 • written 6.5 years ago by kumar.vinod81280

It is a straightforward command and it should work, it could be useful if you could give us a sample mydata.ped and mylist.txt file.

ADD REPLYlink modified 6.5 years ago • written 6.5 years ago by zx87548.2k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1961 users visited in the last hour