Question: Plink --Update-Alleles Command Is Not Resulting In Right Way
gravatar for kumar.vinod81
6.0 years ago by
New Delhi
kumar.vinod81280 wrote:

I am running update allele command in plink but results is not coming in right way: Command is like this: ./plink --file mydata --update-alleles mylist.txt --make-bed --out newfile

but whenever there is a heterozygote in the file its change it into 0 0 not into the given code in the mylist.txt. Is is their any command I am to put with this to identify heterozygote.

plink command-line • 1.9k views
ADD COMMENTlink modified 4.9 years ago by Biostar ♦♦ 20 • written 6.0 years ago by kumar.vinod81280

It is a straightforward command and it should work, it could be useful if you could give us a sample mydata.ped and mylist.txt file.

ADD REPLYlink modified 6.0 years ago • written 6.0 years ago by zx87546.7k
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