Hi I removed the bacterial sequences from a eukaryotic dataset by comparing with bacterial database.As a result there were around 2,000 sequences. But now there are some 20 eukaryotic sequences in this resultant bacterial dataset. How do I remove this eukaryotic sequences? I am thinking of doing blastn with ncbi-nt database and checking manually & it will work. Anyway, is there a better way to do it? Is it possible to get an idea of what families do these bacteria belong based on blastn/blastp result?
thank you raghul