Hi, I am implementing tool for detecting of structural variants and I am combining read pair and split read methods. The input is BAM with already mapped paired ends. When I find pair where one end is properly aligned and second is aligned with clipped sequence, I want to remap this sequence in surroundings of properly aligned end. So I need tool which can take these paired ends as input and do that for me. Or input can be clipped sequence and region where it should be mapped. So my question is if there is any tools, which can handle this. Also all other ideas are welcome. Thanks!
Question: Remap Clipped Sequence
7.6 years ago by
Tomáš Beluský • 90
Tomáš Beluský • 90 wrote:
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