Has anyone had any success working with the tool provided by the chia-pet paper: The papers provides a tool for a complete analysis of chia-PET data set.
We have tried to install the tool and got into several problems, which are too complicated to explain in this thread. I would just like to know if anyone has ever successfully installed the tool and was able to work with it on any paired-end fastq files? We have tried the data set provided by the authors of the paper with no success.
But as the tool is built to work inside one directory (sort of a enclosed environment), I was wondering if someone has a working version of this tool and is willing to share it with others.
Thanks in advance,