I have a set of genes (~50) obtained from clustering gene expression data. I would like to map it on a network like biogrid/hprd and extract a highly connected subnetwork for these genes. Is there any cytoscape or bioconductor package or other program that can do this? (or) what is the best way to do this?
Previous posts mentioned jactivemodules, Bisogenet. But these plugins do not work with current version (cytoscape 2.8.3).
Your suggestions will be helpful. Thank you, Diwan