I'm working on the following task. Our lab guys have genotyped a couple of SNPs related to a particular disease. I need to reconstruct haplotype blocks consisting of those SNPs.
Plink software, http://pngu.mgh.harvard.edu/~purcell/plink/, seems to be an appropriate solution, but I get stucked with it. Still haven't tried other software solutions like Haploview, Beagle, etc...
Any suggestions are highly appreciated!