Question: Recommendation For Cnv Calling Program Based On Depth Of Coverage From Bam
0
gravatar for Leszek
4.6 years ago by
Leszek3.8k
IIMCB, Poland
Leszek3.8k wrote:

I'm looking for the tool able to call deletions and duplications using depth of coverage straight from BAM file.
I went through many programs, but most of them require some sort of BAM and/or genome processing (ie VarScan require samtools pileup).

depth-of-coverage bam cnv • 1.8k views
ADD COMMENTlink modified 4.6 years ago by liangkaiye250 • written 4.6 years ago by Leszek3.8k
0
gravatar for liangkaiye
4.6 years ago by
liangkaiye250
United States
liangkaiye250 wrote:

for whole genome, you may try CNVnator

ADD COMMENTlink written 4.6 years ago by liangkaiye250
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 970 users visited in the last hour