Hi I have set of genes with GO IDs. I obtained this data using CAMERA workflow for "Metagenomic data annotation and clustering ". Now I want "to get a rough idea how these annotated sequences are distributed in different gene categories". For this aspect CateGOrizer was good but this tool gives information for all 3 categories in a single pie diagram. It will be better to have 3 different pie for each category. I tried REViGO but it dont give the visual representation for all available sequences but only few selected sequences. I have around 8000 sequences. can anybody please give me a suggestion to visualize the data as I want? You can see the data below!
thank you very much raghul
#query GO reference DB reference family e-value description contig00965.4 GO:0006412 TIGRFAM TIGR00001 2e-29 translation contig00965.4 GO:0022625 TIGRFAM TIGR00001 2e-29 cytosolic large ribosomal subunit contig00965.4 GO:0000315 TIGRFAM TIGR00001 2e-29 organellar large ribosomal subunit contig00965.4 GO:0003735 TIGRFAM TIGR00001 2e-29 structural constituent of ribosome contig37137.2 GO:0006412 TIGRFAM TIGR00001 2e-21 translation contig37137.2 GO:0022625 TIGRFAM TIGR00001 2e-21 cytosolic large ribosomal subunit contig37137.2 GO:0000315 TIGRFAM TIGR00001 2e-21 organellar large ribosomal subunit contig37137.2 GO:0003735 TIGRFAM TIGR00001 2e-21 structural constituent of ribosome contig00611.6 GO:0006412 TIGRFAM TIGR00001 9.5e-20 translation contig00611.6 GO:0022625 TIGRFAM TIGR00001 9.5e-20 cytosolic large ribosomal subunit contig00611.6 GO:0000315 TIGRFAM TIGR00001 9.5e-20 organellar large ribosomal subunit