Hi. I'm a developer of biological network analysis/visualization software called Cytoscape. I'm planning to create a short tutorial for absolute beginners of biological network analysis. Currently I'm looking for a sample dataset which covers most common workflows.
There are tons of public PPI datasets, such as BioGRID, IntAct, STRING, etc. However, I do not know good, public database focused on Protein-DNA interactions. Does anyone know such public datasets? Since I'm going to use it in Cytoscape application, database with bulk download feature or web service access is preferable.
Thanks in advance. Kei