Question: How Can I Download Or Get A Pathway List From Kegg
1
gravatar for rezwan.02
6.6 years ago by
rezwan.0220
rezwan.0220 wrote:

friends, need help. the following link is graphical representation of metabolic pathways. but how can i download or get the pathway list. i used pathway entry option before. but from last few days it is not working. plz help me out.

http://www.genome.jp/kegg-bin/show_pathway?sty01100

pathway kegg download • 7.7k views
ADD COMMENTlink modified 2.2 years ago by Biostar ♦♦ 20 • written 6.6 years ago by rezwan.0220

What do you mean by "get the pathway list"? A list of genes / gene products involved in the pathway?

ADD REPLYlink written 6.6 years ago by Neilfws48k

Do you need list of all pathways or list for pathways found in your data?

ADD REPLYlink written 6.6 years ago by Nari870
3
gravatar for Nari
6.6 years ago by
Nari870
United States
Nari870 wrote:

CLICK this and you will get a htext list of all pathways
Enjoy.

Mind that these lists are frequently updated. Check latest list at http://www.kegg.jp/kegg-bin/get_htext?ko00001.keg then click download htext.

ADD COMMENTlink modified 3.0 years ago • written 6.6 years ago by Nari870
2
gravatar for Khader Shameer
6.6 years ago by
Manhattan, NY
Khader Shameer18k wrote:

You can use REST based KEGG API to retrieve pathway list or other information.

ADD COMMENTlink written 6.6 years ago by Khader Shameer18k
1
gravatar for fubioinf
6.6 years ago by
fubioinf20
fubioinf20 wrote:

You can use the CPDB for a pathway / gene mapping for ALL major websites like kegg or wikipathways in one file in the download section. http://cpdb.molgen.mpg.de If you are only interested in KEGG, you can still grep it. In the download section, you will find additional GO Term/Gene mappings.

ADD COMMENTlink modified 6.6 years ago • written 6.6 years ago by fubioinf20
0
gravatar for k.nirmalraman
6.6 years ago by
k.nirmalraman1000
Germany
k.nirmalraman1000 wrote:

There is a nice collection of Genesets from Broad Institute as part of GSEA in MSigDB.

I am not sure if KEGG is still available for downloading.. Others may correct me if I am wrong.

ADD COMMENTlink written 6.6 years ago by k.nirmalraman1000
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