Is there a web-server or software that can create a network between given signaling pathways? Imagine that we know about a number of pathways that are involved in a specific disease, now I would like to generate a network (topological net) between these pathways. In these networks, nodes are signaling pathways and edges indicates relationship between those pathways...
You may also try 'Reactome' Data sets [http://www.reactome.org/ReactomeGWT/entrypoint.html]. There is a Commercial One- Pathway Studio [http://www.ariadnegenomics.com/?id=41] from Ariadne Genomics, if you could try out. Thanks,
Yes there is .. You can use PathwayCommons graph searches.
You can seed the paths-between search with the pathway members of 2 pathways. I'd suggest limiting yourself to a distance of 1 or 2 as chances are you will get a huge network back.
For more questions e-mail email@example.com
I hope this helps, Emek