Question: How To Put Bootstrap And Posterior Probability Values Together In The Same Phylogenetic Tree?
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gravatar for cacaucenturion
7.6 years ago by
cacaucenturion210 wrote:

How should we put bootstrap and posterior probability values together in the same phylogenetic tree like the following one? Thanks a lot!

http://ars.els-cdn.com/content/image/1-s2.0-S105579031300119X-gr3.jpg enter image description here

phylogenetics • 5.9k views
ADD COMMENTlink modified 4.4 years ago by Guangchuang Yu2.4k • written 7.6 years ago by cacaucenturion210
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gravatar for arnstrm
7.6 years ago by
arnstrm1.8k
Ames, IA
arnstrm1.8k wrote:

I think those pictures are professionally done. I had previously edited trees in power point to put both branch support values.
There is a similar question here: What is a good phylogenetic tree display program for large data sets? Maybe few of these suggestions may work: A: What is a good phylogenetic tree display program for large data sets?

ADD COMMENTlink written 7.6 years ago by arnstrm1.8k

Powerpoint may work for a presentation, but is unacceptable for publication quality images. I recommend neal.platt's suggestions for open freeware, but also Adobe Illustrator is another (albeit expensive) option. See here (What Phylogeny Viewing Software Do You Use?) also.

ADD REPLYlink modified 7.6 years ago • written 7.6 years ago by Josh Herr5.7k

I didn't generate the tree in power point. MEGA lets you export the tree as editable lines and text, which can be easily customized in power point (coloring/adding text/collapsing). For eg., http://www.biomedcentral.com/1471-2164/11/276/figure/F4 (we used just power point saved as PDF here)

ADD REPLYlink written 7.6 years ago by arnstrm1.8k
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gravatar for neal.platt
7.6 years ago by
neal.platt230
United States
neal.platt230 wrote:

We use Inkscape for our work. There is a small learning curve, but you can produce high-quality, publication ready images quickly. Gimp is a strong alternative as well.

ADD COMMENTlink written 7.6 years ago by neal.platt230
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gravatar for Guangchuang Yu
4.4 years ago by
Guangchuang Yu2.4k
China/Guangzhou/Southern Medical University
Guangchuang Yu2.4k wrote:

A recent published paper (Published online: 22 July 2016), The mitochondrial genome map of Nelumbo nucifera reveals ancient evolutionary features, use ggtree to visualize bootstrap value inferred by RAxML and phyML in the same tree.

A lot of such trees can be found in supplemental file. Annotation task like this can be very easy to achieve by ggtree .

ADD COMMENTlink modified 4.4 years ago • written 4.4 years ago by Guangchuang Yu2.4k
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