Question: Ngs Tool Analysis For Snp&Indel Calling Of Pooling Data
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gravatar for marcodpc
6.0 years ago by
marcodpc30
marcodpc30 wrote:

What are the best and most used analysis tool actually, for SNP and indel calling of pooled data?

I'm using: GATK Freebayes that have specified options for data in pool.

Now I have found CRISP.

Are there others and good tool that I ignore ?

thanks!

indel ngs tool snp • 1.8k views
ADD COMMENTlink modified 6.0 years ago by Zev.Kronenberg11k • written 6.0 years ago by marcodpc30
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gravatar for Zev.Kronenberg
6.0 years ago by
United States
Zev.Kronenberg11k wrote:

I have had good luck with SNVer. I haven't benchmarked it or compared it to other tools, but I have found several GWAS candidates with it. You might also be interested in PoPoolation.

ADD COMMENTlink modified 6.0 years ago • written 6.0 years ago by Zev.Kronenberg11k
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