i have run the REL (in linux, with comand line) , and it suggest the MSA.fit.1.2.3.4.5.6.7.8.9.10 is the best.
When processing REL result (in Windows, with GUI), Use Standard analyis - Codon Selection Analyses - CodonBivariateRateProcessor.bf. process MSA.fit.1.2.3.4.5.6.7.8.9.10, it came to an error:
but processing MSA.fit.1.2.3, it comes all right.
When processing MSA.fit.1.2.3 and before, it comes all right.
When processing MSA.fit.1.2.3.4 MSA.fit.1.2.3.5....MSA.fit.1.2.3.4.5.6.7.8.9.10, it comes with ERROR!
i've tried 4 computers with Windows 7(X64), Windows XP. get the same error.
Now, it want to find the rate class with dN>dS. are there other ways to get it? like in linux wiht command lines(i've tried, but failed. I don't know the steps)?
