A Gist To Get The Genbank Ids For All The Nucleotide Entries Linked To A Taxon Id

Forum:A Gist To Get The Genbank Ids For All The Nucleotide Entries Linked To A Taxon Id

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10.9 years ago

Fabrice Jossinet ▴ 150

Hi all,

Here is my gist to get the genbank ids for all the nucleotide entries linked to a taxon id. The number of requests is minimized using the retmax and retstart parameters provided by the Entrez Utilities.

Best,
Fabrice

ncbi python eutils • 2.5k views

ADD COMMENT • link updated 13 months ago by Ram 43k • written 10.9 years ago by Fabrice Jossinet ▴ 150

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Nice to see, after our Twitter conversation.

ADD REPLY • link 10.9 years ago by Neilfws 49k

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Nice and self contained - I wonder how short it would be using Biopython's Bio.Entrez rather than using urllib and ElementTree directly?

ADD REPLY • link 10.9 years ago by Peter 6.0k

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as @Peter said why did not you use BioPython is there is an important reason for that

ADD REPLY • link 10.9 years ago by Medhat 9.7k

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