Orthomclpairs Problems -----Orthomcl
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11.4 years ago

When I use orthomclPairs, it produced three files. However, all of these three files ( coothologs.txt, inparalogs.txt and orthologs.txt ) are empty..

Anyone can give me suggestions?? Thanks

orthomcl • 2.5k views
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Give us some more details: what command did you run? Did it generate mclinput file? how many genomes are you using for orthoMCL?

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9.9 years ago
Peter vH ▴ 130

When you do the blast search, do you do all vs all blast (i.e. not just blast of query set vs a different set)? If you don't, you get these three zero length files.

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