Question: How To Get Entire Kegg Or Reactome Pathway Genes As One Interaction Network?
gravatar for Diwan
7.6 years ago by
United States
Diwan610 wrote:

I am currently extracting sub-networks for my genes of interest using BioGrid network.

Instead of BioGrid, if I use the entire KEGG pathways as one gene interaction network I might get some interesting subnetwork/pathway information. Is there any such KEGG network available? Where can I download such KEGG pathway/genes information. (or) is there any such network available for reactome?

Thank you, Diwan

pathway network kegg • 5.6k views
ADD COMMENTlink modified 7.6 years ago by Arnaud Ceol850 • written 7.6 years ago by Diwan610
gravatar for Giovanni M Dall'Olio
7.6 years ago by
London, UK
Giovanni M Dall'Olio27k wrote:

from this page you can dowload the whole reactome database:

i don't think there is a whole metabolome file for kegg, it's not the way kegg is designed.

ADD COMMENTlink written 7.6 years ago by Giovanni M Dall'Olio27k
gravatar for Arnaud Ceol
7.6 years ago by
Arnaud Ceol850
Milan, Italy
Arnaud Ceol850 wrote:

Reactome provides interactions in tab-delimited files: You can also access this data through a psicquic web service (e.g.

ADD COMMENTlink written 7.6 years ago by Arnaud Ceol850
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