Question: How To Get Entire Kegg Or Reactome Pathway Genes As One Interaction Network?
1
gravatar for Diwan
6.6 years ago by
Diwan560
United States
Diwan560 wrote:

I am currently extracting sub-networks for my genes of interest using BioGrid network.

Instead of BioGrid, if I use the entire KEGG pathways as one gene interaction network I might get some interesting subnetwork/pathway information. Is there any such KEGG network available? Where can I download such KEGG pathway/genes information. (or) is there any such network available for reactome?

Thank you, Diwan

pathway network kegg • 5.0k views
ADD COMMENTlink modified 6.6 years ago by Arnaud Ceol850 • written 6.6 years ago by Diwan560
2
gravatar for Giovanni M Dall'Olio
6.6 years ago by
London, UK
Giovanni M Dall'Olio26k wrote:

from this page you can dowload the whole reactome database: http://www.reactome.org/download/index.html

i don't think there is a whole metabolome file for kegg, it's not the way kegg is designed.

ADD COMMENTlink written 6.6 years ago by Giovanni M Dall'Olio26k
2
gravatar for Arnaud Ceol
6.6 years ago by
Arnaud Ceol850
Milan, Italy
Arnaud Ceol850 wrote:

Reactome provides interactions in tab-delimited files: http://www.reactome.org/download/index.html. You can also access this data through a psicquic web service (e.g. http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml)

ADD COMMENTlink written 6.6 years ago by Arnaud Ceol850
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1729 users visited in the last hour