How To Get Entire Kegg Or Reactome Pathway Genes As One Interaction Network?

Question

[Diwan]

I am currently extracting sub-networks for my genes of interest using BioGrid network.

Instead of BioGrid, if I use the entire KEGG pathways as one gene interaction network I might get some interesting subnetwork/pathway information. Is there any such KEGG network available? Where can I download such KEGG pathway/genes information. (or) is there any such network available for reactome?

Thank you, Diwan

Answer 1

[Giovanni M Dall'Olio]

from this page you can dowload the whole reactome database: http://www.reactome.org/download/index.html

i don't think there is a whole metabolome file for kegg, it's not the way kegg is designed.

Answer 2

[Arnaud Ceol]

Reactome provides interactions in tab-delimited files: http://www.reactome.org/download/index.html. You can also access this data through a psicquic web service (e.g. http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml)