Annotations Of Insulator Elements For The Mouse Genome
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11.5 years ago
Anima Mundi ★ 2.9k

Hello,

does anybody know where could I find annotations of insulator elements for the mouse genome? I was thinking about using a custom track (but I am open to other possibilities), but until now I did not find any. I saw that Ensembl displays VISTA and cisRED regulatory elements, but I would like to use something more specific.

bed mouse • 2.5k views
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11.5 years ago
Tky ★ 1.0k

You may take a look at the CTCF peaks from the mouse Encode project.

The data can be downloaded here: http://chromosome.sdsc.edu/mouse/download.html

Like other regulator elements, the insulators can also be tissue-specific, so pay attention to this if the data for your target tissue is not available .

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Not all CTCF binding sites are insulators, right?

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