Question: (Closed) Hierarchical Clustering Based On Gene Expression Values
gravatar for APJ
6.7 years ago by
APJ30 wrote:

Hi, I have RNA-Seq data for 16 samples without replicates, I tried hierarchical clustering by pearson correlation distance method and average linkage method .But the results are not making sense and not satisfied. Actually, I wanted to cluster all 16 samples and see the hierarchy based of gene-expression values and get the relation between the samples based on the count values ...

Is there a simple way to look into this problem?? ANy ideas is greatly helpful:)

R clustering • 9.4k views
ADD COMMENTlink modified 6.7 years ago • written 6.7 years ago by APJ30

Dear Priya, welcome to biostar this seems to be a duplicate of Clustering data (RNA-seq) using R to produce a heatmap, clustering gene expression for time course RNA-Seq data, Hierarchical clustering and heatmap analysis for RNA-Seq data or Heatmap of RNA-seq data. As you see, highly similar questions have been asked here already, so you should be able to find an answer on this site. Therefore I will close this question to avoid further redundancy. If you think that this is not justified please edit your question or post a comment. Hope to see you again on this site.

ADD REPLYlink modified 6.7 years ago • written 6.7 years ago by Michael Dondrup47k
Please log in to add an answer.
The thread is closed. No new answers may be added.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1677 users visited in the last hour