Hi, I have been provided with a file of 3'UTRs that are mutated from the core facility. I'm trying to match that location to a miRNA target (or predicted target. Mor information below.
Type of data:
- Patient specific 3'UTR that have mutations in them. This includes chromosomal information, SNP ref numbers, and gene name. Q. How can you determine if the SNP/mutation appears in a miRNA target and/or seed sequence of a target. There doesn't seem to be reliable information on miRNA target locations let alone seed sequence information ? I guess targetscan could be used for predicted as well ?
which databases or workflows would you use for this ?
Thanks in advance.