Hi, I tried to understand VCF 4 for homozygous variety SNPs, but I do not know how to convert the following genotypes to VCF:
genotypes: - variety1 = 2*G (variety1 has two G's at locus position) - variety2 = 3*A (variety2 has two A's at locus position) allele A/G
This is the beginning of the VCF file, but I stucked with above genotypes
#CHROM - X8r POS 391 ID X8r0000001 REF G ALT A QUAL 2 FILTER . INFO DP=5 FORMAT
How to create a VCF 4 file for the above homozygous variety SNP?
Thank you in advance.