Off topic:How To Compute Dn/Ds From Pairwise Alignment
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10.9 years ago
gundalav ▴ 380

I have a set of sequences (human 5'utr region), with which I already did pairwise alignment against chimp and rat whole genome. So I have the output in MAF and SAM format.

Is there any existing tool which can take these pairwise alignment and compute the dn/ds score?
evolution alignment sequence genomics • 3.4k views
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