I'm going to use VarScan2 and MuSiC software to identify mutated genes from exome sequencing data.
At first, I used VarScan2 to identity somatic mutations. I will then use MuSiC to identify significantly mutated genes from VarScan2 results. However, the output file generated from VarScan2 is in VCF format, but MuSiC only accepts MAF file format as an input.
I was wondering if there is any available tools for converting VCF file format to MAF.