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• Combined miRNA Target Prediction Algorithms for Custom Datasets/Species
  I'm looking to run miRNA target prediction analysis on a miRNA dataset in an aphid species. I'd l...
• miRNAs detected in bulk mRNA-Seq data - how to annotate?
  Hello, In our bulk mRNA-Seq data, about ~600 of our ~21,000 detected genes were miRNAs. All of t...
• Using Flexarry software to analyze expression of miRNA-seq data
  Dear all, I'm wondering if anybody has an experience to use flexarry software to find differenti...
• Normalizing data from GEO dataset
  Hi eveyone. I want to use a miRNA seq dataset, from GEO (GSE28884) as a validation dataset, to be...
• Integrating scRNA-seq datasets with different numbers of biological replicates
  Dear all, I'm looking to integrate scRNA-seq datasets generated from different experiments, in w...
• miRNA-seq pipeline in biostar handbook?
  Hi all friends, I'm looking for a complete pipeline for miRNA-seq analysis (not web-based tools)...
• Mutual Information
  I have RNA-seq as well as miRNA-seq data. These two datasets are of different types. I'm interest...
• single- or pair-end small RNA seq for miRNAs?
  Hi all! I'm in possession of a small RNA-seq dataset obtained from Illumina PE-50bp flow cell se...
• Summarizing Mirna-Seq Data Based On Ucsc Hg19 Alignment Results
  I have miRNA-seq data (Single end) which I map to the whole UCSC hg19 genome. Now given the SAM ...
• mirna / rna-seq integration
  I have RNA-SEQ data as well as miRNA-seq from the same samples. I'm looking for the best way to i...
• Does mirna-seq is stranded?
  I'm using miRNA-seq data retrieved from the TCGA project. When looking on the aligned sequences ...
• TCGA- which files to download for analyzing differentially expressed miRNAs
  I have just started working on TCGA data, and I observed that **the RNA-seq (HT-Seq counts) files...
• miRNA binding detection from RNA-seq reads
  Hello, I have a question regarding miRNA binding to mRNA. If a mRNA binds with miRNA, it will fo...
• Looking databases for experimentaly validated miRNA-target interaction
  Hi,   I'm looking rich databses for experimentally validated miRNA-target  interactions for hum...
• microRNA-seq analysis from RNA-seq data
  Dear all, I've got some RNA-seq data that mRNAs were purified using oligo-dt and sequenced via t...
• How To Find Mirna Binding Site Coordinates In Isoforms?
  Hi all, I'm looking for the web server or software to find the miRNA binding site cordinates on...
• How miRNA sequencing works by Illumina GA ?
  Hi all, I'm using TCGA data set to analysis the expression of miRNA in cancers. They used Illumi...
• Best Way To Measure Mirna-Seq Abundance
  I know RPKM is most commonly used for RNA-Seq. But I'm not sure how reliable it is for single end...
• Question: Mirna-Seq Data For Cd34+ Cells
  I am looking for the miRNA-seq data for CD34+ cells as a controls. Any information will be apprec...
• Database for RNA-Seq, ctDNA, miRNA-Seq
  Is there a good database to look at for RNA-Seq of primary tumors or plasma, ctDNA-Seq, and miRNA...
• tool for enrichment analysis of miRNA
  Dear all, I'm looking for a tool for doing miRNA enrichment analysis. we usually do gene enrichm...
• How to get unquantified reads with featurecounts
  Hi there, I'm using featurecounts and I'm wondering if their is a way to get all reads which wher...
• Using bioconductor GEOmetadb to find RNA-seq datasets
  Hello,   I'm trying to collect RNA-seq datasets for co-expression network analysis. I've been u...