Representing Genome Wide Regulatory Elements

Question

[ancient_learner]

Hi I want to represent the presence of certain important regulatory elements for each chromosome separately. I came across a particular paper (figure 2) and it suits my dataset. can anybody tell me how to make this out. below is the link to that paper

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3320767/#!po=22.0000

Answer 1

[ancient_learner]

Ya found out. Its ggplot2 (dotplot).

[ancient_learner]

But couldn't sort how to place the chromosome with cytobands in between also if i have a data set something like below how to plot the elements on same axis with different color representing different functional elements

bin number_of_functional_elements
1    3#promoters   
2    4#enhancers
3    9#promoters

I want to put enhancers on rightside of the axis(up) and promoters on left side of the axis (down) with different colors for each