Question: How To Get The Plot And Heatmap For The Nucleosome Pattern (Proximity) At +1500 And -1500 From Tss For A List Of Genes?
0
gravatar for sigmagama8
7.0 years ago by
sigmagama80
sigmagama80 wrote:

I have the .wig format file for the peaks generated by using the MACS14 for chip-seq reads of mouse genome and list of genes. For the list of genes I need to plot the proximity of nucleosome. anyone can suggest a script or tool to work on it.

chipseq chip-seq scripting script • 2.7k views
ADD COMMENTlink modified 7.0 years ago by Ming Tang2.6k • written 7.0 years ago by sigmagama80

Can you please elaborate the question. Give example input and output if possible.

ADD REPLYlink written 7.0 years ago by aravind ramesh520
1
gravatar for Ming Tang
7.0 years ago by
Ming Tang2.6k
Houston/MD Anderson Cancer Center
Ming Tang2.6k wrote:

for nucleosome positioning, I guess you need the MNase-seq data. try ngsplot https://code.google.com/p/ngsplot/

ADD COMMENTlink written 7.0 years ago by Ming Tang2.6k
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