How To Get The Plot And Heatmap For The Nucleosome Pattern (Proximity) At +1500 And -1500 From Tss For A List Of Genes?

Question

[sigmagama8]

I have the .wig format file for the peaks generated by using the MACS14 for chip-seq reads of mouse genome and list of genes. For the list of genes I need to plot the proximity of nucleosome. anyone can suggest a script or tool to work on it.

[aravind ramesh]

Can you please elaborate the question. Give example input and output if possible.

Answer 1

[Ming Tommy Tang]

for nucleosome positioning, I guess you need the MNase-seq data. try ngsplot https://code.google.com/p/ngsplot/