Illumina Forward To 1000 Genome Forward
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9.4 years ago
venks ▴ 730

Hi,

There is always confusion/mess that is created by calling a SNP "FORWARD".. When it is actually in Illumina forward (in context with the primer they've used) against 1000 Genome forward. I have seen people wasting time on calling the variants that are in wrong direction.

Do Bioinformaticians write scripts to compare Illumina forward and 1000 genome forward?

If so what are the factors that they take into consideration?

Thanks

snp illumina variant-calling 1000genomes genotype • 1.8k views
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