Question: Go Term (Biological Process) At Level 4 For A Gene
1
gravatar for Vikas Bansal
6.7 years ago by
Vikas Bansal2.4k
Berlin, Germany
Vikas Bansal2.4k wrote:

Dear all,

I know this question has been asked before but I did not find any answer for this. I got a list of 121 genes and my supervisor wants me to extract GO terms at level 4 (terms that are 4 nodes away from the root). I looked into DAVID, REVIGO, AmiGO, SUPERFAMILY, Biomart etc. but did not find any solution. Any suggestions?

Thanks in advance, Vikas

human gene-ontology • 3.5k views
ADD COMMENTlink modified 6.7 years ago by Biostar ♦♦ 20 • written 6.7 years ago by Vikas Bansal2.4k
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DAVID has level options.. once you upload the list and proceed to analysis, you can select the GO terms level.

ADD REPLYlink modified 6.7 years ago by Eric Normandeau10k • written 6.7 years ago by Bharat Iyengar270

Thanks for the reply. Just to be sure - Does "GOTERM_BP_4" mean level 4 basic process?

ADD REPLYlink modified 6.7 years ago • written 6.7 years ago by Vikas Bansal2.4k
1

BP = Biological Process

ADD REPLYlink written 6.7 years ago by Bharat Iyengar270

Thanks.That was my stupid mistake.

ADD REPLYlink written 6.7 years ago by Vikas Bansal2.4k
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