Question: Bwa-Mem And Quality Trimming
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gravatar for nupurgupta0806
4.3 years ago by
nupurgupta080630 wrote:

I want to switch from using bwa aln+sampe to bwa-mem, but I notice that there is no quality soft-trimming in the latter. (It is present in bwa aln). Am I missing something? Why has it not been included? Is there any other way to do this? Thanks!

bwa • 1.6k views
ADD COMMENTlink modified 3.6 years ago by Biostar ♦♦ 20 • written 4.3 years ago by nupurgupta080630
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gravatar for Istvan Albert
4.3 years ago by
Istvan Albert ♦♦ 74k
University Park, USA
Istvan Albert ♦♦ 74k wrote:

you can use seqtk (also by Heng Li) to perform the trimming

ADD COMMENTlink written 4.3 years ago by Istvan Albert ♦♦ 74k
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