Agilent Tiling Array Analysis

Question

[Honey]

I have an agilent Chip on chip tiling array data and wonder if there is a GUI based workflow out which can help me to analyze the data. Thanks

Answer 1

[Charles Warden]

Does your institution have any commerical licenses? I know Partek has a Chip-chip workflow. I think GeneSpring might also have similar functionality.

I haven't tested it myself, but I believe CisGenome is an open-source tool that can also help you:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3072298/

You may be able to find others by Googling "chip-chip peak calling GUI"