Question: Searching Genes Are Available In Query Signalling Pathway Or Not?
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gravatar for Abdul Rawoof
7.3 years ago by
Abdul Rawoof60
United States
Abdul Rawoof60 wrote:

I have a list of human breast cancer genes and I want to check that how many genes are available in particular pathway like Wnt, Notch, apoptosis, AML etc. Thanks,

gene pathway biomart kegg • 1.4k views
ADD COMMENTlink modified 7.3 years ago by Pierre Lindenbaum131k • written 7.3 years ago by Abdul Rawoof60
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gravatar for Assa Yeroslaviz
7.3 years ago by
Assa Yeroslaviz1.4k
Munich
Assa Yeroslaviz1.4k wrote:

You can take a look in DAVID. Here you upload your genes and than annotate them using the functional annotation chart. If you choose KEGG as an option you can find the genes participating in the different pathways.

Assa

ADD COMMENTlink written 7.3 years ago by Assa Yeroslaviz1.4k
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gravatar for Pierre Lindenbaum
7.3 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum131k wrote:

using QuickGO, and GO:0007219=" Notch signaling pathway"

http://www.ebi.ac.uk/QuickGO/GAnnotation?tax=9606&relType=IP&goid=%20GO:0007219%20&format=tsv

ADD COMMENTlink written 7.3 years ago by Pierre Lindenbaum131k
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