I should assemble the hiseq2000 read set (558 million PE reads) on linux server which is consisted of 16 core and 128G RAM.
I've been thinking the SOAPdenovo is the most memory-efficient de novo assembler, but my server can't assemble using SOAPdenovo. I guess RAM capacity is not sufficient.
What is the most memory-efficient de novo assembler for eukaryote genome?
Thanks in advance.