Hello I wanted to convert the .sam file to .bed format. I have used the following command in bedops to accomplish that
sam2bed sam2bed.foo.sam | sort-bed - > sorted-reads.bed
However i am getting the error like this
FATAL: kernel too old Segmentation fault (core dumped)
The same happened with bedops-v2.0.0a as well as bedops-v2.2.0 versions. Do i have to install samtools to do this will it not be done by bedops alone?